学術論文（Original Papers）　　　　　　　　　　　　　　　　　　　　　　　　　　　　　　
*:Corresponding Author

29. Tomoki Miyashita, Katsuhiro Shiono*. Development of a method for high-throughput quantitation of soil-surface roots of rice (Oryza sativa) and wild rice (O. glumaepatula) using an overhead scanner. Plant Root, 17: 16-25 (2023)

28. 江尻真斗*, 塩野克宏. 野生イネ Oryza glumaepatulaの種子根の形態・解剖・組織学的特徴. 根の研究, 52(1): (2023)

27. Katsuhiro Shiono*, Akiko Koshide, Kazunari Iwasaki, Kazumasa Oguri, Takeshi Fukao, Morten Larsen, Ronnie N. Glud. Imaging the snorkel effect during submerged germination in rice: Oxygen supply via the coleoptile triggers seminal root emergence underwater. Frontiers in Plant Science 13: 946776 (2022)
Article

26. Katsuhiro Shiono*, Marina Yoshikawa, Tino Kreszies, Sumiyo Yamada, Yuko Hojo, Takakazu Matsuura, Izumi Mori, Lukas Schreiber, Toshihito Yoshioka. Abscisic acid is required for exodermal suberization to form a barrier to radial oxygen loss in the adventitious roots of rice (Oryza sativa), New Phytologist, 233(2): 655-669 (2022)
PubMed

25. Takuya Koyama*, Shun Murakami, Toshihiko Karasawa, Masato Ejiri, Katsuhiro Shiono. Complete root specimen of plants grown in soil-filled root box: sampling, measuring, and staining method. Plant Methods, 17: 97 (2021)
Article

24. Imene Rajhi*, Hirokazu Takahashi, Katsuhiro Shiono, Mikio Nakazono. Laser microdissection: sample preparation and applications. Euro-Mediterranean Journal for Environmental Integration, 6: 6 (2021)
Article


23. Masato Ejiri, Yuto Sawazaki, Katsuhiro Shiono*. Some accessions of Amazonian wild rice (Oryza glumaepatula) constitutively form a barrier to radial oxygen loss along adventitious roots under aerated. Plants, 9(7): 880 (2020）
Article


22. Katsuhiro Shiono, Shu Taira*. Imaging of multiple plant hormones in roots of rice (Oryza sativa) using nanoparticle assisted laser desorption/ionization mass spectrometry. Journal of Agricultural and Food Chemistry, 68(24): 6770-6775 (2020)
PubMed


21. Masato Ejiri, Katsuhiro Shiono*. Groups of multi-cellular passage cells in the root exodermis of Echinochloa crus-galli varieties lack not only suberin lamellae but also lignin deposits. Plant Signaling & Behavior, 15(2): e1719749 (2020)
PubMed


20. Masato Ejiri, Katsuhiro Shiono*. Prevention of radial oxygen loss is associated with exodermal suberin along adventitious roots of annual wild species of Echinochloa. Frontiers in Plant Science, 10:254 (2019)
Article


19. Katsuhiro Shiono*, Masato Ejiri, Kana Shimizu, Sumiyo Yamada. Improved waterlogging tolerance of barley (Hordeum vulgare) by pre-treatment with ethephon. Plant Production Science, 22(2): 285-295 (2019)
Article


18. Katsuhiro Shiono, Riho Hashizaki, Toyofumi Nakanishi, Tatsuko Sakai, Takushi Yamamoto, Koretsugu Ogata, Ken-ichi Harada, Hajime Ohtani, Hajime Katano, Shu Taira*. Multi-imaging of cytokinin and abscisic acid on the roots of rice (Oryza sativa) using matrix-assisted laser desorption/ionization mass spectrometry. Journal of Agricultural and Food Chemistry 65: 7624−7628 (2017) (Cover art)
PubMed


17. Takaki Yamauchi, Katsuhiro Shiono, Minoru Nagano, Aya Fukazawa, Miho Ando, Itsuro Takamure, Hitoshi Mori, Naoko K. Nishizawa, Maki Kawai-Yamada, Nobuhiro Tsutsumi, Kiyoaki Kato, Mikio Nakazono*. Ethylene biosynthesis is promoted by very-long-chain fatty acids during lysigenous aerenchyma formation in rice roots. Plant Physiology 169(1): 180-193 (2015)
PubMed


16. Katsuhiro Shiono*, Miho Ando, Shunsaku Nishiuchi, Hirokazu Takahashi, Kohtaro Watanabe, Motoaki Nakamura, Yuichi Matsuo, Naoko Yasuno, Utako Yamanouchi, Masaru Fujimoto, Hideki Takanashi, Kosala Ranathunge, Rochus B. Franke, Nobukazu Shitan, Naoko K. Nishizawa, Itsuro Takamure, Masahiro Yano, Nobuhiro Tsutsumi, Lukas Schreiber, Kazufumi Yazaki, Mikio Nakazono*, Kiyoaki Kato*. RCN1/OsABCG5, an ATP-binding cassette (ABC) transporter, is required for hypodermal suberization of roots in rice (Oryza sativa). The Plant Journal 80(1): 40-51 (2014)
PubMed


15. Katsuhiro Shiono*, Takaki Yamauchi, So Yamazaki, Bijayalaxmi Mohanty, Al Imran Malik, Yoshiaki Nagamura, Naoko K. Nishizawa, Nobuhiro Tsutsumi, Timothy D. Colmer, Mikio Nakazono*. Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of Experimental Botany 65(17): 4795-4806 (2014)
PubMed


14. Katsuhiro Shiono*, Sumiyo Yamada. Waterlogging tolerance and capacity for oxygen transport in Brachypodium distachyon (Bd21). Plant Root 8: 5-12 (2014)
Article


13. Tomomi Abiko, Lukasz Kotula, Katsuhiro Shiono, Al Imran Malik, Timothy D. Colmer, Mikio Nakazono*. Enhanced formation of aerenchyma and induction of a barrier to radial oxygen loss in adventitious roots of Zea nicaraguensis contribute to its waterlogging tolerance as compared with maize (Zea mays ssp. mays). Plant, Cell and Environment 35(9): 1618-1630 (2012)
PubMed


12. Katsuhiro Shiono*, Satoshi Ogawa, So Yamazaki, Hiroko Isoda, Tatsuhito Fujimura, Mikio Nakazono, Timothy D. Colmer. Contrasting dynamics of radial O2-loss barrier induction and aerenchyma formation in rice roots of two lengths. Annals of Botany 107(1): 89-99 (2011) (Cover art)
PubMed


11. Koichiro Aya, Go Suzuki, Keita Suwabe, Tokunori Hobo, Hirokazu Takahashi, Katsuhiro Shiono, Kentaro Yano, Nobuhiro Tsutsumi, Mikio Nakazono, Yoshiaki Nagamura, Makoto Matsuoka*, Masao Watanabe*. Comprehensive network analysis of anther-expressed genes in rice by the combination of 33 laser microdissection and 143 spatiotemporal microarrays. PLoS ONE 6(10): e26162 (2011)
PubMed


10. Imene Rajhi, Takaki Yamauchi, Hirokazu Takahashi, Shunsaku Nishiuchi, Katsuhiro Shiono, Ryosuke Watanabe, Ahmed Mliki, Yoshiaki Nagamura, Nobuhiro Tsutsumi, Naoko K. Nishizawa, Mikio Nakazono*. Identification of genes expressed in maize root cortical cells during lysigenous aerenchyma formation using laser microdissection and microarray analyses. New Phytologist 190(2): 351-368 (2011)
PubMed


9. Hirokazu Takahashi, Hisae Kamakura, Yutaka Sato, Katsuhiro Shiono, Tomomi Abiko, Nobuhiro Tsutsumi, Yoshiaki Nagamura, Naoko K. Nishizawa, Mikio Nakazono*. A method for obtaining high quality RNA from paraffin sections of plant tissues by laser microdissection. Journal of Plant Research 123(6): 807-813 (2010)
PubMed


8. Katsuhiro Shiono*, Al Imran Malik, So Yamazaki, Naoko K. Nishizawa, Yoshiaki Nagamura, Nobuhiro Tsutsumi, Timothy D. Colmer, Mikio Nakazono. Transcriptional profiling of root hypodermal tissues during formation of a barrier to radial O2 loss in rice (Oryza sativa L.). Proceedings of 7th ISRR Symposium Root Research and Applications 044-5: 1-5 (2009) PROCEEDINGS


7. Mikio Nakazono*, Imene Rajhi, Hirokazu Takahashi, Katsuhiro Shiono, Kazuhiro Ohtsu, Nobuhiro Tsutsumi, Tieming Ji, Daniel S. Nettleton, Patrick S. Schnable, Naoko K. Nishizawa. Identification of genes expressed during aerenchyma formation in maize roots using laser microdissection and a microarray. Proceedings of 7th ISRR Symposium Root Research and Applications 036-5: 1-4 (2009) PROCEEDINGS


6. Keita Suwabe, Go Suzuki, Hirokazu Takahashi, Katsuhiro Shiono, Makoto Endo, Kentaro Yano, Masahiro Fujita, Hiromi Masuko, Hiroshi Saito, Tomoaki Fujioka, Fumi Kaneko, Tomohiko Kazama, Yoko Mizuta, Makiko Kawagishi-Kobayashi, Nobuhiro Tsutsumi, Nori Kurata, Mikio Nakazono, Masao Watanabe*. Separated transcriptomes of male gametophyte and tapetum in rice: validity of a laser microdissection (LM) microarray. Plant Cell Physiology 49(10): 1407-1416 (2008)
Article


5. Tokunori Hobo, Keita Suwabe, Koichiro Aya, Go Suzuki, Kentaro Yano, Takeshi Ishimizu, Masahiro Fujita, Shunsuke Kikuchi, Kazuki Hamada, Masumi Miyano, Tomoaki Fujioka, Fumi Kaneko, Tomohiko Kazama, Yoko Mizuta, Hirokazu Takahashi, Katsuhiro Shiono, Mikio Nakazono, Nobuhiro Tsutsumi, Yoshiaki Nagamura, Nori Kurata, Masao Watanabe*, Makoto Matsuoka*. Various spatiotemporal expression profiles of anther-expressed genes in rice. Plant Cell Physiology 49(10): 1417-1428 (2008)
Article


4. 塩野克宏*, 安部征雄, 河原崎里子, 濱野裕之, 田内裕之, 小島紀徳, 山田興一．酸素安定同位体分析によるハードパン破砕土壌に植林された樹木の水源深度の推定．水文・水資源学会誌 20(5): 409-423 (2007)
Article


3. Katsuhiro Shiono*, Yukuo Abe, Hiroyuki Tanouchi, Hajime Utsugi, Nobuhide Takahashi, Hiroyuki Hamano, Toshinori Kojima, Koichi Yamada. Growth and survival of arid land forestation species (Acacia aneura, Eucalyptus camaldulensis and E. salubris) with hardpan blasting. Journal of arid land studies 17(1): 11-22 (2007)


2. Katsuhiro Shiono*, Hideki Suganuma, Yukuo Abe, Hiroyuki Tanouchi, Hajime Utsugi, Masahiro Saito, Nobuhide Takahashi, Toshinori Kojima, Koichi Yamada. Biomass growth estimation of an afforestation site and natural forests in an arid land of Western Australia. Journal of Arid Land Studies 15(4): 251-254 (2006)（査読付き）PROCEEDINGS


1. Katsuhiro Shiono*, Yutaka Kanri, Yukuo Abe, Hiroyuki Tanouchi, Toshinori Kojima, Koichi Yamada. Stand Growth Estimation of Representative Plant Communities in Arid Land of Western Australia. Journal of Arid Land Studies 14S: 207-210 (2004)（査読付き）PROCEEDINGS
著書・訳書（Books）
3. Shu Taira, Katsuhiro Shiono. Imaging of Plant Hormones with Nanoparticle-Assisted Laser Desorption/Ionization Mass Spectrometry. In: Lee YJ. (eds) Mass Spectrometry Imaging of Small Molecules. Methods in Molecular Biology, vol 2437. Humana, New York, NY. (2022)

2. 塩野克宏, 高橋宏和, 中園幹生*. 過湿土壌に対する作物の応答と適応機構．坂上潤一, 中園幹生, 島村聡, 伊藤治, 石澤公明 編, 湿地環境と作物 -環境と調和した作物生産をめざして-, 養賢堂: 123-133 (2010)


1. 塩野克宏*. 耐乾性メカニズム. 日本沙漠学会編, 沙漠の辞典, 丸善: 131 (2009)
総説・解説（Reviews）
12. 塩野克宏*. 二次元オプトードを用いた根圏環境情報の定量的イメージング. アグリバイオ. 6(6): 23-27 (2022)


11. 島村聡*, 宮下智貴, 江尻真斗, 塩野克宏, 野村康之, 山内卓樹. 通気組織の空隙率測定方法ー4. 各測定方法の特徴と選択ー. 根の研究. 30(4):124-128 (2021)


10. 野村康之, 塩野克宏, 島村聡, 山内卓樹*. 植物組織の空隙率測定方法―3. 切片法―. 根の研究. 30(3): 76-82 (2021)
Article


9. 宮下智貴, 江尻真斗, 島村聡, 山内卓樹, 塩野克宏*. 植物組織の空隙率測定方法－2．アルキメデス法－. 根の研究. 30(2): 41-45 (2021)
Article


8. 島村聡*, 塩野克宏, 山内卓樹. 植物組織の空隙率測定方法－1．比重瓶法－. 根の研究 (2021). 30(1):8-12(2021)
Article


7. Masato Ejiri, Takeshi Fukao, Tomoki Miyashita, Katsuhiro Shiono*. A barrier to radial oxygen loss helps the root system cope with waterlogging-induced hypoxia. Breeding Science 71: 40–50 (2021)
Article


6. 塩野克宏*, 平修. 質量分析イメージングによる複数の植物ホルモンの可視化. 植物の生長調節. 55(2): 84-91 (2020)
(Cover art)


5. 江尻真斗, 宮下智貴, 塩野克宏*. アマゾン川流域に分布する野生イネ（Oryza glumaepatula）がもっている洪水耐性を利用した育種の可能性. アグリバイオ 4(7): 80-82 (2020)


4. 塩野克宏*. ROLバリア: 湿生植物の過湿状態の土壌への適応を支えるしくみ. 根の研究 25(3): 47-62（2016）
Article


3. Katsuhiro Shiono, Hirokazu Takahashi, Timothy D. Colmer, Mikio Nakazono*. Role of ethylene in acclimations to promote oxygen transport in roots of plants in waterlogged soils. Plant Science 175(1-2): 52-58 (2008)
Abstract


2. 塩野克宏, 高橋宏和, 中園幹生*．植物は過湿土壌にどのように適応しているか．化学と生物 46: 245-251 (2008)
Article


1. 石澤公明, 坂上潤一, 伊藤治, 桜井武司, 阿部淳, 塩野克宏, 中園幹生, 望月俊宏, 高橋秀幸, 渡邊肇, 吉岡俊人, 間野吉郎, 島村聡, 小柳敦史．植物の根に関する諸問題 ［175］-植物の嫌気応答に関する国際会議 (ISPA) 開催報告．農業および園芸 83(3): 387-393 (2008)
招待講演
14. 塩野克宏. 根圏土壌の酸化状態を可視化する！〜2次元酸素オプトードによる酸素イメージングの挑戦〜 . 令和4年度農業・工業原材料生産と光技術研究会「農業の脱炭素化を目指した土壌機能の解明と光技術の応用」, 浜松, 2022 年10 月4日.


13. 塩野克宏. 酸素/分子イメージングへの挑戦 ～「見える」とわかるに近づける(かもしれない！？)～. 日本藻類学会第46回大会 藻類学ワークショップ(オンライン), 2022 年 3 月 28 日.


12. 塩野克宏. 水が多すぎても育つオオムギを！根の形態適応の視点から考える. 麦学オンラインセミナー（オンライン）. 2021年7月28日.


11. 塩野克宏, 越出晃子, 岩崎和也, Morten Larsen, Ronnie N. Glud.２次元オプトードが光をあてる: イネが水中で発芽できるしくみ. 第16回 学際領域における分子イメージングフォーラム（オンライン）,2020年11月19日.


10. 塩野克宏. サイトCからはじまった研究: どのように植物は水が多すぎることを知り適応応答するのか？ 植林研究に関する研究報告会, 東京, 2019年12月28日.


9. Katsuhiro Shiono, Shu Taira, Multiple plant-hormone imaging using matrix-assisted laser desorption/ionization mass spectrometry imaging (MALDI-MSI) and nano-particle assisted laser desorption/ionization (Nano-PALDI) MSI. Imaging mass spectrometry for phytochemical genomics, Yokohama, 2019年4月25日.


8. Katsuhiro Shiono. Abscisic acid is required for root suberization at the exodermis to form a barrier to radial oxygen loss in rice (Oryza sativa). Biosynthesis and function of suberin, Bunkyo, Tokyo, 2018年10月24日.


7. Katsuhiro Shiono. How rice regulates root aeration system under water? Botanical seminars in Bonn, Bonn, Germany, 2018年7月20日.


6．塩野克宏．植物ホルモンの複数同時イメージングからみえてくる環境ストレス応答．第6回植物イメージングの会，横浜，2018年2月27日.


5．塩野克宏. イネの耐湿性に関与する根の酸素通気システムの研究. 第47回根研究集会（学術奨励賞受賞講演）, 堺, 2017年10月28日.


4．塩野克宏．植物はどのような根を形成して過湿状態の土壌に適応するのか？ 第127回 日本森林学会大会 企画シンポジウム「樹木根の成長と機能」, 藤沢, 2016年3月28日.


3．塩野克宏. イネ科植物の根と耐湿性に関する研究. 第三回ブラキポディウムワークショップ, 横浜, 2015年3月5日.


2．Katsuhiro Shiono. Identification of a plant hormone involved in the formation of a barrier against radial oxygen loss in rice. 4th International Rice Congress. Bangkok, Thailand, 29-31 October 2014.


1．塩野克宏. エチレンと根の酸素通気: イネの根が低酸素環境で生きるために獲得した適応戦略. 日本雑草学会 第52回大会, ミニシンポジウム「イネやノビエが水田冠水条件で発芽〜定着できるしくみ」, 京都, 2013年4月13日-14日.
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